Publications
Preprints
Xu H, Lotfy P, Gelb S, Pragana A, Hehnly C, Shipley FB, Zawadzki ME, Cui J, Deng L, Taylor M, Webb M, Lidov HGW, Andermann ML, Chiu IM, Ordovas-Montanes J, Lehtinen MK.
Tomalka JA., Owings A., Galeas-Pena M., Ziegler CGK., Robinson TO., Wichman TG., Laird H., Williams HB., Dhaliwal NS., Everman S., Zafar Y., Shalek AK., Horwitz BH., Ordovas-Montanes J., Glover SC., Gibert Y.
Ziegler, CGK., Owings, AH., Miao, VN., Navia, AW., Tang, Y., Bromley, JD., Lotfy, P., Sloan, M., Laird, H., Williams, HB., George, M., Drake, RS., Pride, Y., Abraham, GE., Senitko, M., Robinson, TO., Lionakis, MS., Shalek, AK., Ordovas-Montanes, J., Horwitz, BH., Glover, SC.
Cao Y.*, Guo Z.*, Vangala P., Donnard E., Liu P., McDonel P., Ordovas-Montanes J., Shalek A.K., Finberg R.W., Wang J.P., Garber M.
*Co-main authors
2025
Walsh JML., Miao VN., Owings AH., Tang Y., Bromley JD., Kazer SW., [...] & Ordovas-Montanes, J.
Nature Immunology, 2025
2024
Kazer SW., Match CM., Langan EM., Messou MA., LaSalle TJ., O'Leary E., Marbourg J., Naughton K., von Andrian UH., Ordovas-Montanes J.
Immunity, 2024
Ziegler CGK., Owings AH., Galeas-Pena M., Kazer SW., Miao VN., Navia AW., Tang Y., Bromley JD., Lotfy P., Sloan M., Laird H., Williams HB., George M., Drake RS., Pride Y., Abraham GE III., Senitko M., Robinson TO., Diamond G., Lionakis MS., Shalek AK., Ordovas-Montanes J., Horwitz BH., Glover SC. Microbiology Spectrum, 2024
2023
Zilbauer M., James KR., Kaur M., Pott S., Li Z., Burger A., Thiagarajah JR., Burclaff J., Jahnsen FL., Perrone F., Ross AD., Matteoli G., Stakenborg N., Sujino T., Moor A., Bartolome-Casado R., Bækkevold ES., Zhou R., Xie B., Lau KS., Din S., Magness ST., Yao Q., Beyaz S., Arends M., Denadai-Souza A., Coburn LA., Gaublomme JT., Baldock R., Papatheodorou I., Ordovas-Montanes J., Boeckxstaens G., Hupalowska A., Teichmann SA., Regev A., Xavier RJ., Simmons A., Snyder MP., Wilson KT., Gut Cell Atlas Consortium, Human Cell Atlas Gut Biological Network Consortium.
Nature Reviews Gastroenterology & Hepatology, 2023
Dudchenko O., Ordovas-Montanes J., Bingle CD.
Biochemical Journal, 2023
Weeks EM., Ulirsch JC., Cheng NY., Trippe BL., Fine RS., Miao J., Patwardhan TA., Kanai M., Nasser J., Fulco CP., Tashman KC., Aguet F., Li T., Ordovas-Montanes J., Smillie CS., Biton M., Shalek AK., Ananthakrishnan AN., Xavier RJ., Regev A., Gupta RM., Lage K., Ardlie KG., Hirschhorn JN., Lander ES., Engreitz JM., Finucane HK.
Nature Genetics, 2023
2022
Kummerlowe C., Mwakamui S., Hughes TK., Mulugeta N., Mudenda V., Besa E., Zyambo K., Shay JES., Fleming I., Vukovic M., Doran BA., Aicher TP., Wadsworth MH II, Bramante JT., Uchida AM., Fardoos R., Asowata OE., Herbert N., Yilmaz ÖH., Kløverpris HN., Garber JJ., Ordovas-Montanes J., Gartner ZJ., Wallach T., Shalek AK., Kelly P.
Science Translational Medicine, 2022
Niederlova V., Kazer SW., Ordovas-Montanes J.
Immunity, 2022
Niederlova V., Kazer SW., Ordovas-Montanes J.
Immunity, 2022
Zeve D., Stas E., de Sousa Casal J., Mannam P., Qi W., Yin X., Dubois S., Shah MS., Syverson EP., Hafner S., Karp JM., Carlone DL, Ordovas-Montanes J., Breault DT.
Nature Communications, 2022
Mead BE., Hattori K., Levy L., Imada S., Goto N., Vukovic M., Sze D., Kummerlowe C., Matute JD., Duan J, Langer R., Blumberg RS., Ordovas-Montanes J., Yilmaz OH., Karp JM., Shalek AK.
Nature Biomedical Engineering, 2022
Buchheit KM., Sohail A., Hacker J., Maurer R., Gakpo D., Bensko JC., Taliaferro F., Ordovas-Montanes J., Laidlaw TM.
Journal of Allergy and Clinical Immunology, 2022
Gideon HP., Hughes TK., Tzouanas CN., Wadsworth MH., Tu AA., Gierahn TM., ... & Shalek AK.
Immunity, 2022
2021
Huang S., Ziegler CGK., Austin J., Mannoun, N., Vukovic, M., Ordovas-Montanes, J., Shalek, A.K., von Andrian, U.H.
Cell, 2021
Pae J., Ersching J., Castro TBR, Schips M., Mesin L., Allon SJ., Ordovas-Montanes J., Mlynarczyk C., Melnick A., Efeyan A., Shalek AK., Meyer-Hermann M., Victora G.
Journal of Experimental Medicine, 2021
Bein A.*, Kim S.*, Goyal G.*, Cao W.*, Fadel C.*, Naziripour A., Sharma S., Swenor B., LoGrande N., Nurani A., Miao VN., Navia AW., Ziegler C., Ordovas-Montanes J., Prabhala P., Kim MS., Prantil-Baun R., Rodas M., Jiang A., O'Sullivan L., Tillya G., Shalek AK., Ingber DE.
*Co-main authors
Cell, 2021
Tkachev V.#, Kaminski J., Potter EL., Furlan SN., Yu A., Hunt DJ., McGuckin C., Zheng H., Colonna L., Gerdemann U., Carlson J., Hoffman M., Olvera J., English C., Baldessari A., Panoskaltsis-Mortari A., Watkins B., Qayed M., Suessmuth Y., Betz K., Bratrude B., Langston A., Horan JT., Ordovas-Montanes J., Shalek AK., Blazar BR., Roederer M., Kean LS.#
#Co-corresponding authors
Science Translational Medicine, 2021
Dwyer DF.*, Ordovas-Montanes J., Allon SJ., Buchheit KM., Vukovic M., Derakhshan T., Feng C., Lai J., Hughes TK., Nyquist SK., Giannetti MP., Berger B., Bhattacharyya N., Roditi RE., Katz HR., Nawijn MC., Berg M., Van Den Berge M., Laidlaw TM., Shalek AK.#, Barrett NA.#, Boyce JA.#
Co-main authors, #Co-corresponding authors
Science Immunology, 2021
Buchheit KM., Lewis E., Gakpo D., Hacker J., Sohail A., Taliaferro F., Giron EB., Asare C., Vukovic M., Bensko JC., Dwyer DF., Shalek AK., Ordovas-Montanes J., Laidlaw TM.
Journal of Allergy and Clinical Immunology, 2021
Ziegler CGK.*, Miao VN.*, Owings AH.*, Navia AW.*, Tang Y.*, Bromley JD., Lotfy P., Sloan M., Laird H., Williams HB., George M., Drake RS., Christian T., Parker A., Sindel CS., Burger MW., Pride Y., Hasan M., Abraham III GE., Senitko M., [...] Robinson TO., Shalek A.K.#, Glover SC.#, Horwitz BH.#, Ordovas-Montanes J.#
*Co-main authors, #Co-corresponding authors
Cell, 2021
Costa-Martins AG., Mane K., Lindsey BB., Ogava RL., Castro Í., Jagne YJ., Sallah HJ., Armitage EP., Jarju S., Ahadzie B., Ellis-Watson R., Tregoning JS., Bingle CD., Bogaert D., Clarke E., Ordovas-Montanes J., Jeffries D., Kampmann B., Nakaya HI., de Silva TI.
Cell Reports Medicine, 2021
Zhang X., McDonald JG., Aryal B., Canfran‐Duque A., Goldberg EL., Araldi E., Ding W., Fan Y., Thompson BM., Singh AK. Li Q.,Tellides G., Ordovas-Montanes J., Garcia Milian R., Deep Dixit V., Ikonen E., Suarez Y., Fernandez-Hernando C.
Proceedings of the National Academy of Sciences, 2021
Ouahed J.*, Kelsen JR.*, Spessott WA., Kooshesh K., Sanmillan ML., Dawany N., Sullivan KE., Hamilton KE., Slowik V., Nejentsev S., Neves JF., Flores H., Chung WK., Wilson A., Anyane-Yeboa K., Wou K., Jain P., Field M., Tollefson S., Dent MH., Li D., Naito T., McGovern DPB., Kwong,AC., Taliaferro F., Ordovas-Montanes J., Horwitz BH., Kotlarz D., Klein C., Evans J., Dorsey J., Warner N., Elkadri A., Muise AM., Goldsmith J., Thompson B., Engelhardt KR., Cant AJ., Hambleton S., Barclay A., Toth-Petroczy A., Vuzman D., Carmichael N., Bodea C., Cassa CA., Devoto M., Maas RL., Behrens EM., Giraudo CG., Snapper SB.
*Co-main authors Journal of Crohn's and Colitis, 2021
2020
Hughes TK.*, Wadsworth MH.*, Gierahn TM.*, Do T., Weiss D., Andrade PR., Ma F., de Andrade Silva BJ., Shao S., Tsoi LC., Ordovas-Montanes J., Gudjonsson JE., Modlin RL., Love JC.^#, Shalek AK.^#
*Co-main authors, ^Co-senior authors, #Co-corresponding authors
Immunity, 2020
Mitsialis V., Wall S., Liu P., Ordovas-Montanes J., Parmet T., Vukovic M., Spencer D., Field M., McCourt C., Tthaker J., Bousvaros A., BCH IBD Center, BWH Crohn’s and Colitis Center, Shalek A., Kean L., Horwitz B., Goldsmith J., Tseng G., Snapper SB.^#, Konnikova L^#.
^Co-senior authors, #Co-corresponding authors
Gastroenterology, 2020
Ziegler CGK.*, Allon SJ.*, Nyquist SK.*, Mbano IM.*, Miao VN., Tzouanas CN., Cao Y., Yousif AS., Bals J., Hauser BM., Feldman J., Muus, C., Wadsworth II, MH., Kazer SW., Hughes TK., Doran B., Gatter GJ., Vukovic M., Taliaferro F., Mead BE., Guo Z., Wang JP., Gras D., Plaisant M., Ansari M., Angelidis I., Adler H., Sucre JMS., Taylor CJ., Lin B., Waghray A., Mitsialis V., Dwyer DF., Buchheit KM., Boyce JA., Barrett NA., Laidlaw TM., Carroll SL., Colonna L., Tkachev V., Peterson CW., Yu A., Zheng HB., Gideon HP., Winchell CG., Lin PL., Bingle CD., Snapper SB., Kropski JA., Theis FJ., Schiller HB., Zaragosi L-E., Barbry P., Leslie A., Kiem H-P., Flynn JL., Fortune SM., Berger B., Finberg, RW., Kean LS., Garber M., Schmidt AG., Lingwood D., Shalek, A.K.#, Ordovas-Montanes, J.#, HCA Lung Biological Network
*Co-main authors, #Co-corresponding authors
Cell, 2020
Ordovas-Montanes J., Beyaz S., Rakoff-Nahoum S., Shalek AK.
Nature Reviews Immunology, 2020
Kazer SW., Aicher TP., Muema DM., Carroll SL., Ordovas-Montanes J., Miao VN., Tu AA., Ziegler CGK., Nyquist SK., Wong EB., Ismail N., Moodly A., Berger B., Love JC., Dong K., Leslie A., Ndhlovu ZM., Ndung’u T., Walker BD., Shalek AK.
Nature Medicine, 2020
Buchheit KM., Dwyer DF., Ordovas-Montanes J., Katz H., Lewis E., Vukovic M., Lai J., Bankova L., Bhattacharyya N., Shalek AK., Barrett NA., Boyce JA., Laidlaw TM.
Journal of Clinical Allergy and Immunology, 2020
2019
Smillie CS.*, Biton M.*, Ordovas-Montanes J.*, Sullivan K., Burgin G., Graham DB., Herbst RH., Rogel N., Slyper M., Waldman J., Sud M., Andrews EA., Haber AL., Vickovic S., Dionne D., Nguyen LT., Villani AC., Hofree M., Creasey EA., Huang H., Rozenblatt-Rosen O., Garber JJ., Khalili H., Desch AN., Daly MJ., Ananthakrishnan AN.#, Shalek AK.#, Xavier RJ.#, Regev A.#.
*Co-main authors, #Co-corresponding authors
Cell, 2019
Pepe-Mooney BJ.*, Dill,MT.*, Alemany A., Ordovas-Montanes J., Matsushita Y., Rao A., Sen A., Miyazaki M, Anakk S., Dawson PA., Ono N., Shalek AK., van Oudenaarden A., Camargo FD.#
*Co-main authors, #Corresponding author
Cell Stem Cell, 2019
2018 and earlier
Biton M.*, Haber AL.*, Beyaz S., Rogel N., Smillie C., Shekhar K., Chen Z., Wu C., Ordovas-Montanes J., Alvarez D., Herbst RH., Tirosh I., Burgin G., Dionne D., Zhang M., Rozenblatt-Rosen O., Shi HN., Kuchroo V., Yilmaz O., Regev A.^, Xavier RJ.*#
*Co-main authors, ^Senior author, #Corresponding author
Cell, 2018
Ordovas-Montanes J.*, Dwyer DF.*, Nyquist SK., Buchheit KM., Vukovic M., Deb C., Wadsworth MH., Hughes TK., Kazer SW., Yoshimoto E., Bhattacharyya N., Cahill KN., Katz HR., Laidlaw TM., Boyce JA., Barrett NA#. Shalek AK#.
*Co-main authors, #Co-corresponding authors
Nature, 2018
Mead BE.*#, Ordovas-Montanes J.*, Braun AP., Levy L., Szucs MJ, MacMullan M., Ammendolia D., Zheng Y., Bhargava P., Yin X., Hughes TK., Wadsworth II MH., Ahmad R., Rakoff-Nahoum S., Carr S., Langer R., Collins JJ., Shalek AK., Karp JM.#
*Co-main authors, #Co-corresponding authors
BMC Biology, 2018
Martin-Gayo E., Cole M., Kolb KE., Ouyang Z., Cronin J., Kazer SW., Ordovas-Montanes J., Lichterfeld M., Walker BD., Yosef N.#, Shalek AK.#, Yu XG.#
#Co-corresponding authors
Genome Biology, 2018
Nandin IS.*, Fong C.*, Deantonio C., Torreno-Pina JA., Pecetta S., Maldonado P., Gasparrini F., Ordovas-Montanes J., Kazer SW., Kjaer S., Borley DW., Nair U., Coleman JA., Lingwood D., Shalek AK., Meffre E., Poignard P., Burton DR., Batista FD.#
*Co-main authors, #Corresponding author
Journal of Experimental Medicine, 2017
Mar FA., Ordovas-Montanes J., Oksenberg N., Olson AM.
Trends in Immunology, 2016
Ordovas-Montanes J., Rakoff-Nahoum S., Huang S., Riol-Blanco L., Barreiro O., von Andrian UH.
Trends in Immunology, 2015
Riol-Blanco L.*, Ordovas-Montanes J.*, Perro M., Naval E., Thiriot A., Paust S., Wood JN., von Andrian UH.
*Co-main authors
Nature, 2014
Lafaille FG., Pessach IM., Zhang SY., Ciancanelli M., Herman M., Mostoslavsky G., Ordovas-Montanes J., Jouanguy E., Plancoulaine S., Tu E., Elkabetz Y., Schlaeger TM., Daley GQ., Tardieu M., Abel L., Casanova JL., Studer L., Notarangelo LD.
Nature, 2012